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11.
12.
D. Allen Clabo Jr. Hamilton D. Dickson Toby L. Nelson 《Journal of molecular modeling》2000,6(2):341-348
Semiempirical and ab initio theoretical methods have been used to investigate molecular structures of the chalcogen-substituted carboxylic acid isomers RC(=O)XH (chalcogenol acid) and RC(=X)OH (chalcogenon acid). A recent experimental report suggests that the chalcogenon isomers, although less stable at room temperature, predominate at low temperature in polar solvents and that there is only a small barrier to isomerization between the isomers. Theoretical calculations have been used to locate minimum energy structures of chalcogen-substituted carboxylic acid isomers and to calculate energy differences between pairs of isomers. Carboxylic acids are well known to dimerize, especially in the gas phase and in non-polar solvents. We have, therefore, also calculated energies of dimerization of the chalcogen-substituted acids by optimizing the geometries of the symmetric dimers. We note that the PM3 level of theory is only qualitatively correct for sulfur- and selenium-containing species but fails even qualitatively for the tellurium-containing compounds. Ab initio results confirm the experimental observations and provide good estimates of both isomerization and dimerization energies. We conclude that for many functional groups with tautomers RC(=X)YH and RC(=Y)XH, the more acidic tautomer is the one with the acid proton on the smaller, more electronegative atom, although in many cases this may not be the more stable tautomer.Electronic Supplementary Material available. 相似文献
13.
Toby R. Long 《Inorganica chimica acta》2005,358(6):2141-2145
The electrogenerated chemiluminescence (ECL) of platinum (II) octaethyl-porphyrin (PtOEP) in acetonitrile:methylene chloride (CH3CN:CH2Cl2, 50:50 v/v) and CH2Cl2 is reported. ECL was generated upon sweep to positive potentials using tri-n-propylamine (TPrA) as an oxidative-reductive coreactant. ECL efficiencies (?ecl) of 0.18 in CH3CN:CH2Cl2 (50:50 v/v) and 3.90 in methylene chloride were obtained using Ru(bpy)3(PF6)2 (bpy = 2,2′-bipyridine) as a relative standard (?ecl = 1). The ECL intensity peaks at a potential corresponding to oxidation of PtOEP and TPrA, and ECL emission spectra are nearly identical to photoluminescence emission spectra, indicating that emission is from the PtOEP triplet state. 相似文献
14.
Lichenological evidence for the recognition of inland rain forests in western North America 总被引:2,自引:0,他引:2
Aim The coastal temperate rain forests of north‐western North America are internationally renowned as the archetypal expression of the temperate rain forest biome. Less well documented is the existence of somewhat similar forests 500–700 km inland on the windward slopes of the Columbia and Rocky Mountains. Here we attempt to show that these inland ‘wetbelt’ forests warrant rain forest status. Location North‐western North America. Methods We use tree‐dwelling macrolichens to assess the degree of environmental congruence between the coastal temperate rain forests and their inland counterparts. Results We report three key findings: (1) 40% of oceanic, epiphytic macrolichens found in Pacific coastal rain forests occur also in inland regions; (2) epiphytic species richness decreases with decreasing latitude, such that roughly 70% of disjunct oceanic species are restricted to regions north of 51° N; and (3) the southward decline in lichen diversity is correlated with a parallel decrease in summer precipitation, but not with mean annual precipitation. Main conclusions These observations are consistent with the recognition of an inland rain forest formation between 50 and 54° N. Inland rain forests represent a small, biologically significant ecosystem whose continued fragmentation and conversion to tree plantations warrant close scrutiny. 相似文献
15.
Hua Jiang Yueqing Xie Andrew Burnette John Roach Steven L. Giardina Toby T. Hecht Stephen P. Creekmore Gautam Mitra Jianwei Zhu 《Applied microbiology and biotechnology》2013,97(2):621-632
Immunotoxins are rationally designed cancer targeting and killing agents. Disulfide stabilized antibody Fv portion—toxin conjugates (dsFv-toxin) are third generation immunotoxins containing only the antibody fragment variable portions and a toxin fused to the VH or VL. Pseudomonas exotoxin fragment (PE-38) is a commonly used toxin in immunotoxin clinical trials. dsFv-toxin purification was previously published, but the recovery was not satisfactory. This report describes the development of a cGMP production process of the dsFv-toxin that incorporated a novel purification method. The method has been successfully applied to the clinical manufacturing of two dsFv-PE38 immunotoxins, MR1-1 targeting EGFRvIII and HA22 targeting CD22. The two subunits, VL and VH PE-38 were expressed separately in Escherichia coli using recombinant technology. Following cell lysis, inclusion bodies were isolated from the biomass harvested from fermentation in animal source component-free media. The dsFv-toxin was formed after denaturation and refolding, and subsequently purified to homogeneity through ammonium sulfate precipitation, hydrophobic interaction and ion-exchange chromatography steps. It was shown, in a direct comparison experiment using MR1-1 as model protein, that the recovery from the new purification method was improved three times over that from previously published method. The improved recovery was also demonstrated during the clinical production of two dsFv-PE38 immunotoxins—MR1-1 and HA22. 相似文献
16.
Peter Burlinson David Studholme Joanna Cambray-Young Darren Heavens John Rathjen Jonathan Hodgkin Gail M Preston 《The ISME journal》2013,7(6):1126-1138
The bacteriovorous nematode Caenorhabditis elegans has been used to investigate many aspects of animal biology, including interactions with pathogenic bacteria. However, studies examining C. elegans interactions with bacteria isolated from environments in which it is found naturally are relatively scarce. C. elegans is frequently associated with cultivation of the edible mushroom Agaricus bisporus, and has been reported to increase the severity of bacterial blotch of mushrooms, a disease caused by bacteria from the Pseudomonas fluorescens complex. We observed that pseudomonads isolated from mushroom farms showed differential resistance to nematode predation. Under nutrient poor conditions, in which most pseudomonads were consumed, the mushroom pathogenic isolate P. fluorescens NZI7 was able to repel C. elegans without causing nematode death. A draft genome sequence of NZI7 showed it to be related to the biocontrol strain P. protegens Pf-5. To identify the genetic basis of nematode repellence in NZI7, we developed a grid-based screen for mutants that lacked the ability to repel C. elegans. The mutants isolated in this screen included strains with insertions in the global regulator GacS and in a previously undescribed GacS-regulated gene cluster, ‘EDB'' (‘edible''). Our results suggest that the product of the EDB cluster is a poorly diffusible or cell-associated factor that acts together with other features of NZI7 to provide a novel mechanism to deter nematode grazing. As nematodes interact with NZI7 colonies before being repelled, the EDB factor may enable NZI7 to come into contact with and be disseminated by C. elegans without being subject to intensive predation. 相似文献
17.
Background
Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unraveling the functional significance of non-coding DNA depends on how well we are able to align non-coding DNA sequences. However, the alignment of non-coding DNA sequences is more difficult than aligning protein-coding sequences. 相似文献18.
Mark C. Derbyshire Toby E. Newman Yuphin Khentry Akeem Owolabi Taiwo 《Molecular Plant Pathology》2022,23(8):1075-1090
Sclerotinia sclerotiorum is a pathogenic fungus that infects hundreds of plant species, including many of the world's most important crops. Key features of S. sclerotiorum include its extraordinary host range, preference for dicotyledonous plants, relatively slow evolution, and production of protein effectors that are active in multiple host species. Plant resistance to this pathogen is highly complex, typically involving numerous polymorphisms with infinitesimally small effects, which makes resistance breeding a major challenge. Due to its economic significance, S. sclerotiorum has been subjected to a large amount of molecular and evolutionary research. In this updated pathogen profile, we review the evolutionary and molecular features of S. sclerotiorum and discuss avenues for future research into this important species. 相似文献
19.
Sonia Rey Felicity A. Huntingford Sebastian Bolta?a Reynaldo Vargas Toby G. Knowles Simon Mackenzie 《Proceedings. Biological sciences / The Royal Society》2015,282(1819)
Whether fishes are sentient beings remains an unresolved and controversial question. Among characteristics thought to reflect a low level of sentience in fishes is an inability to show stress-induced hyperthermia (SIH), a transient rise in body temperature shown in response to a variety of stressors. This is a real fever response, so is often referred to as ‘emotional fever’. It has been suggested that the capacity for emotional fever evolved only in amniotes (mammals, birds and reptiles), in association with the evolution of consciousness in these groups. According to this view, lack of emotional fever in fishes reflects a lack of consciousness. We report here on a study in which six zebrafish groups with access to a temperature gradient were either left as undisturbed controls or subjected to a short period of confinement. The results were striking: compared to controls, stressed zebrafish spent significantly more time at higher temperatures, achieving an estimated rise in body temperature of about 2–4°C. Thus, zebrafish clearly have the capacity to show emotional fever. While the link between emotion and consciousness is still debated, this finding removes a key argument for lack of consciousness in fishes. 相似文献
20.
David Simmons A. Toby Prevost Chris Bunn Daniel Holman Richard A. Parker Simon Cohn Sarah Donald Charlotte A. M. Paddison Candice Ward Peter Robins Jonathan Graffy 《PloS one》2015,10(3)